mmtfPyspark.webfilters.blastCluster module¶

blastCluster.py

This filter passes through representative structures from the RCSB PDB BlastCLust cluster. A sequence identity thresholds needs to be specified. The representative for each cluster is the first chain in a cluster.

References¶

BlastClust cluster field names: Field names

Examples¶

Find representative PDB entries at 90% sequence identity: >>> sequenceIdentity = 90 >>> pdb = pdb.filter(BlastCluster(90))

class BlastCluster(sequenceIdentity)[source]¶

Bases: object

Filters blast clusters

Attributes

sequenceIdentity

(int) sequence indentity for blast

Methods

`__call__`(t)	Call self as a function.
`get_blast_cluster`(sequenceIdentity)

get_blast_cluster(sequenceIdentity)[source]¶