MMTF-PySpark
0.2.7
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Examples
Examples
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Applications
Example Of Using PySpark To Find Metal Interactions
PDB Drug Bank Mapping
Machine learning - Protein Chain Classification
Example of using mmtfPyspark to find water interactions
Datasets
Jpred Demo
Swiss Model Dataset
DSSP Demo
PDB Meta Data Demo
UniProt Demo
Advanced Zinc Interaction Analysis Example
Use only representative structures
Secondary Structure Element Demo
ATP Interaction Anaylsis
Terminate Spark
Simple Zinc Interaction Analysis Example
Use only representative structures
Secondary Structure Segment Demo
Custom Report Demo
SIFTS Data Demo
Drug Bank Demo
Filters
Filter By Release Date Demo
Filter Protein Dna Complexes Demo
Filter By Groups Demo
Filter By Resolution Demo
Not Filter Demo
Filter By Polymer Chain Type Demo
Filter By Sequence Regex Demo
Filter By Deposition Date Demo
Filter By RFree Demo
Filter Exclusively By L Protein Demo
Filter By Experimental Methods Demo
Interactions
Example of using PySpark to find metal interactions
Example of using PySpark to find ligand interaction fingerprint
Example of using PySpark to find polymer interaction fingerprint
I/O
Download Mmtf Files Demo
Read Local MMTF Full Demo
Write MMTF Subset Demo
Read List Of Entries From Local Hadoop Sequence File
Write MMTF Subset Demo
Read Local MMTF Full Demo
Write MMTF Subset Demo
Mappers
Flat Map Chains Demo
Map To List Demo
Poly-peptide Chain Statistics Example
Map Reduce Example
Read in MMTF files
Count number of atoms
Terminate Spark
Map To Protein Dimers Demo
Machine Learning
Secondary Structure Shifted Word2Vec Encoder
Secondary Structure Blosum62 Encoder Demo
Secondary Structure Word2Vec Encoder
Secondary Structure Elements Word2Vec Encoder Demo
Swiss Prot Sequence To Word2Vec
Secondary Structure Property Encoder Demo
Protein Fold Dataset Creator Dmeo
Secondary Structure Property Encoder Demo
Webfilters
Author Search Demo
Author Search Demo
Wild Type Query Demo
Create Representative Set Demo
Sequence Similarity Search Demo
Keywork Search Demo
Simple Query Demo