mmtfPyspark.utils.traverseStructureHierarchy module¶

traverseStructureHierachy.py

A class that prints of hierachy information about a structure

Examples¶

>>> pdb = mmtfReader.download_mmtf_files(['1STP'], sc)
>>> pdb.foreach(lambda t: traverseStructureHierarchy.printMmtfInfo(t[1]) )

>>> structure = mmtfReader.download_mmtf_files(['1STP'], sc).collect()[0]
>>> traverseStructureHierarchy.print_mmtf_info(structure[1])

print_all_data(structure)[source]¶

print_bioassembly_data(structure)[source]¶

print_chain_entity_group_atom_info(structure)[source]¶

print_chain_group_info(structure)[source]¶

print_chain_info(structure)[source]¶

print_crystallographic_data(structure)[source]¶

print_entity_info(structure)[source]¶: Prints information about unique entities (molecules) in a structure

print_metadata(structure)[source]¶

print_mmtf_info(structure)[source]¶

print_structure_data(structure)[source]¶