mmtfPyspark.utils.mmtfDecoder module¶

mmtfDecoder.py

Provides efficient methods to decode mmtf structures

convert_entity(input_entity)[source]¶

Convert an individual entity from byte strings to regular strings

Parameters:	input_entity : list entities to decode
Returns:	dict decoded entity

convert_group(input_group)[source]¶

Convert an individual group from byte strings to regula strings.

Parameters:	input_group : list the list of input groups
Returns:	dict

decode_entity_list(input_data)[source]¶

Convert byte strings to strings in the entity list.

Parameters:	input_data : list the list of entities
Returns:	list decoded entity list

decode_group_list(input_data)[source]¶

Convert byte strings to strings in the group map.

Parameters:	input_data : list the list of groups
Returns:	list decoded group list

recursive_index_decode(int_array, decode_num=1000)[source]¶

Unpack an array of integers using recursive indexing.

Parameters:	int_array : list the input array of integers decode_num : int the number used for decoding [1000]
Returns:	numpy.array return the numpy.array of integers after recursive index decoding

run_length_decoder_numpy(in_array)[source]¶

Decodes a run length encoded array

Parameters:	in_array : list the input list to apply run length decoder on