mmtfPyspark.io.mmtfWriter module
mmtfWriter.py
Encodes and write MMTF encoded structure data to a Hadoop Sequence File
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to_mmtf_base64(structure)[source]
Encodes a mmtfStructure to base64 byte array
| Parameters: | structure : mmtfStructure
structure to be encoded to base64 byte array
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| Returns: | list
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write_mmtf_files(path, structure)[source]
Encodes and writes MMTF encoded and gzipped structure data to individual .mmtf.gz files.
| Parameters: | path : str
Path to Hadoop file directory
structure : tuple
structure data to be written
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write_sequence_file(path, structure, compressed=True)[source]
Encodes and writes MMTF encoded structure data to a Hadoop Sequnce File
| Parameters: | path : str
Path to Hadoop file directory)
structure : tuple
structure data to be written
compress : bool
if true, apply gzip compression
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