Source code for mmtfPyspark.mappers.structureToBiopython

#!/user/bin/env python
'''structureToBiopython.py:

Maps a structure to BioPython Structure

'''
__author__ = "Mars (Shih-Cheng) Huang"
__maintainer__ = "Mars (Shih-Cheng) Huang"
__email__ = "marshuang80@gmail.com"
__version__ = "0.2.0"
__status__ = "Error"
from Bio.PDB.mmtf import DefaultParser
from mmtf.utils import decoder_utils

# TODO MMTFEncoder error


[docs]class StructureToBiopython(object):

    def __call__(self, t):

        parser = DefaultParser.StructureDecoder()
        t.pass_data_on(parser)

        return parser.structure_bulder.get_structure()