Documentation¶

Datasets

• mmtfPyspark.datasets.advancedSearchDataset module
• mmtfPyspark.datasets.customReportService module
• mmtfPyspark.datasets.dataset_utils module
• mmtfPyspark.datasets.dbPtmDataset module
• mmtfPyspark.datasets.dbSnpDataset module
• mmtfPyspark.datasets.drugBankDataset module
• mmtfPyspark.datasets.g2sDataset module
• mmtfPyspark.datasets.groupInteractionExtractor module
• mmtfPyspark.datasets.jpredDataset module
• mmtfPyspark.datasets.myVariantDataset module
• mmtfPyspark.datasets.pdbPtmDataset module
• mmtfPyspark.datasets.pdbToUniProt module
• mmtfPyspark.datasets.pdbjMineDataset module
• mmtfPyspark.datasets.polymerSequenceExtractor module
• mmtfPyspark.datasets.secondaryStructureElementExtractor module
• mmtfPyspark.datasets.secondaryStructureExtractor module
• mmtfPyspark.datasets.secondaryStructureSegmentExtractor module
• mmtfPyspark.datasets.swissModelDataset module
• mmtfPyspark.datasets.uniProt module

Filters

• mmtfPyspark.filters.containsAlternativeLocations module
• mmtfPyspark.filters.containsDProteinChain module
• mmtfPyspark.filters.containsDSaccharideChain module
• mmtfPyspark.filters.containsDnaChain module
• mmtfPyspark.filters.containsGroup module
• mmtfPyspark.filters.containsLProteinChain module
• mmtfPyspark.filters.containsPolymerChainType module
• mmtfPyspark.filters.containsRnaChain module
• mmtfPyspark.filters.containsSequenceRegex module
• mmtfPyspark.filters.depositionDate module
• mmtfPyspark.filters.experimentalMethods module
• mmtfPyspark.filters.notFilter module
• mmtfPyspark.filters.orFilter module
• mmtfPyspark.filters.polymerComposition module
• mmtfPyspark.filters.rFree module
• mmtfPyspark.filters.rWork module
• mmtfPyspark.filters.releaseDate module
• mmtfPyspark.filters.resolution module
• mmtfPyspark.filters.secondaryStructure module

I/O

• mmtfPyspark.io.mmtfReader module
• mmtfPyspark.io.mmtfWriter module

Mappers

• mmtfPyspark.mappers.structureToBioassembly module
• mmtfPyspark.mappers.structureToBiopython module
• mmtfPyspark.mappers.structureToInteractingResidues module
• mmtfPyspark.mappers.structureToPolymerChains module
• mmtfPyspark.mappers.structureToPolymerSequences module
• mmtfPyspark.mappers.structureToProteinDimers module
• mmtfPyspark.mappers.structureToSecondaryStructureElements module
• mmtfPyspark.mappers.structureToSecondaryStructureSegments module

Machine Learning

• mmtfPyspark.ml.datasetBalancer module
• mmtfPyspark.ml.datasetClassifier module
• mmtfPyspark.ml.datasetRegressor module
• mmtfPyspark.ml.proteinSequenceEncoder module
• mmtfPyspark.ml.pythonRDDToDataset module
• mmtfPyspark.ml.sequenceNgrammer module
• mmtfPyspark.ml.sparkMultiClassClassifier module
• mmtfPyspark.ml.sparkRegressor module

Utils

• mmtfPyspark.utils.columnarStructure module
• mmtfPyspark.utils.columnarStructureX module
• mmtfPyspark.utils.distanceBox module
• mmtfPyspark.utils.dsspSecondaryStructure module
• mmtfPyspark.utils.mmtfDecoder module
• mmtfPyspark.utils.mmtfStructure module
• mmtfPyspark.utils.structureToAllInteractions module
• mmtfPyspark.utils.traverseStructureHierarchy module

Webfilters

• mmtfPyspark.webfilters.advancedQuery module
• mmtfPyspark.webfilters.blastCluster module
• mmtfPyspark.webfilters.chemicalStructureQuery module
• mmtfPyspark.webfilters.customReportQuery module
• mmtfPyspark.webfilters.pdbjMineSearch module
• mmtfPyspark.webfilters.pisces module
• mmtfPyspark.webfilters.sequenceSimilarity module
• mmtfPyspark.webfilters.wildTypeQuery module