.. _demo:

Examples
--------

.. toctree::
   :caption: Applications
   :maxdepth: 1
  
   _static/demos/applications/MetalInteractionsAdvanced.ipynb
   _static/demos/applications/PdbDrugBankMapping.ipynb  
   _static/demos/applications/ProteinChainClassification.ipynb  
   _static/demos/applications/WaterInteractionsExample.ipynb


.. toctree::
   :caption: Datasets
   :maxdepth: 1

   _static/demos/datasets/JpredDemo.ipynb
   _static/demos/datasets/SwissModelDataset.ipynb
   _static/demos/datasets/DSSPDemo.ipynb
   _static/demos/datasets/PDBMetaDataDemo.ipynb                
   _static/demos/datasets/UniProtDemo.ipynb             
   _static/demos/datasets/InteractionAnalysisAdvanced.ipynb
   _static/demos/datasets/SecondaryStructureElementDemo.ipynb  
   _static/demos/datasets/ATPInteractionAnalysis.ipynb  
   _static/demos/datasets/InteractionAnalysisSimple.ipynb
   _static/demos/datasets/SecondaryStructureSegmentDemo.ipynb  
   _static/demos/datasets/CustomReportDemo.ipynb
   _static/demos/datasets/SiftsDataDemo.ipynb
   _static/demos/datasets/DrugBankDemo.ipynb

.. toctree::
   :caption: Filters
   :maxdepth: 1
  
   _static/demos/filters/FilterByReleaseDateDemo.ipynb          
   _static/demos/filters/FilterProteinDnaComplexesDemo.ipynb  
   _static/demos/filters/FilterByGroupsDemo.ipynb
   _static/demos/filters/FilterByResolutionDemo.ipynb           
   _static/demos/filters/NotFilterDemo.ipynb                  
   _static/demos/filters/FilterByPolymerChainTypeDemo.ipynb
   _static/demos/filters/FilterBySequenceRegexDemo.ipynb        
   _static/demos/filters/FilterByDepositionDateDemo.ipynb     
   _static/demos/filters/FilterByRFreeDemo.ipynb
   _static/demos/filters/FilterExclusivelyByLProteinDemo.ipynb  
   _static/demos/filters/FilterByExperimentalMethods.ipynb

.. toctree::
   :caption: Interactions
   :maxdepth: 1

   _static/demos/interactions/MetalInteractionsExample.ipynb           
   _static/demos/interactions/LigandInteractionFingerprintDemo.ipynb
   _static/demos/interactions/PolymerInteractionFingerprintDemo.ipynb

.. toctree::
   :caption: I/O
   :maxdepth: 1

   _static/demos/io/DownloadMmtfFilesDemo.ipynb       
   _static/demos/io/ReadLocalMMTFReducedDemo.ipynb       
   _static/demos/io/WriteMmtfSubsetDemo.ipynb
   _static/demos/io/ReadListOfEntriesFromLocal.ipynb  
   _static/demos/io/WriteMmtfCustomSubsetDemo.ipynb
   _static/demos/io/ReadLocalMMTFFullDemo.ipynb       
   _static/demos/io/WriteMmtfFullUncompressedDemo.ipynb

.. toctree::
   :caption: Mappers
   :maxdepth: 1

   _static/demos/mappers/FlatMapChainsDemo.ipynb  
   _static/demos/mappers/MapToListDemo.ipynb           
   _static/demos/mappers/PolyPeptideChainStatisticsExample.ipynb
   _static/demos/mappers/MapReduceExample.ipynb   
   _static/demos/mappers/MapToProteinDimersDemo.ipynb

.. toctree::
   :caption: Machine Learning
   :maxdepth: 1

   _static/demos/ml/SecondaryStructureShiftedWord2VecEncoder.ipynb  
   _static/demos/ml/SecondaryStructureBlosum62EncoderDemo.ipynb
   _static/demos/ml/SecondaryStructureWord2VecEncoder.ipynb         
   _static/demos/ml/SecondaryStructureElementsWord2VecEncoder.ipynb
   _static/demos/ml/SwissProtSequenceToWord2Vec.ipynb               
   _static/demos/ml/SecondaryStructureOneHotEncoderDemo.ipynb
   _static/demos/ml/ProteinFoldDatasetCreatorDemo.ipynb             
   _static/demos/ml/SecondaryStructurePropertyEncoderDemo.ipynb

.. toctree::
   :caption: Webfilters
   :maxdepth: 1

   _static/demos/webfilters/AuthorSearchDemo.ipynb             
   _static/demos/webfilters/KinaseSearchDemo.ipynb        
   _static/demos/webfilters/WildTypeQueryDemo.ipynb
   _static/demos/webfilters/CreateRepresentativeSetDemo.ipynb  
   _static/demos/webfilters/SequenceSimilarityDemo.ipynb
   _static/demos/webfilters/KeywordSearchDemo.ipynb            
   _static/demos/webfilters/SimpleQueryDemo.ipynb